Package: AquaticLifeHistory 1.0.6

AquaticLifeHistory: Life History Analysis Tools

Estimate aquatic species life history using robust techniques. This package supports users undertaking two types of analysis: 1) Growth from length-at-age data, and 2) maturity analyses for length and/or age data. Maturity analyses are performed using generalised linear model approaches incorporating either a binomial or quasibinomial distribution. Growth modelling is performed using the multimodel approach presented by Smart et al. (2016) "Multimodel approaches in shark and ray growth studies: strengths, weaknesses and the future" <doi:10.1111/faf.12154>.

Authors:Jonathan Smart [aut, cre, ctb]

AquaticLifeHistory_1.0.6.tar.gz
AquaticLifeHistory_1.0.6.zip(r-4.7)AquaticLifeHistory_1.0.6.zip(r-4.6)AquaticLifeHistory_1.0.6.zip(r-4.5)
AquaticLifeHistory_1.0.6.tgz(r-4.6-any)AquaticLifeHistory_1.0.6.tgz(r-4.5-any)
AquaticLifeHistory_1.0.6.tar.gz(r-4.7-any)AquaticLifeHistory_1.0.6.tar.gz(r-4.6-any)
AquaticLifeHistory_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AquaticLifeHistory/json (API)

# Install 'AquaticLifeHistory' in R:
install.packages('AquaticLifeHistory', repos = c('https://jonathansmart.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonathansmart/aquaticlifehistory/issues

Pkgdown/docs site:https://jonathansmart.github.io

Datasets:

On CRAN:

Conda:

6.32 score 8 stars 1 packages 22 scripts 256 downloads 4 exports 55 dependencies

Last updated from:c9dbcba029. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK166
source / vignettesOK242
linux-release-x86_64OK161
macos-release-arm64OK216
macos-oldrel-arm64OK283
windows-develOK111
windows-releaseOK125
windows-oldrelOK120
wasm-releaseOK120

Exports:Calculate_MMIEstimate_Age_MaturityEstimate_GrowthEstimate_Len_Maturity

Dependencies:backportsbitbit64broomclicliprcpp11crayondata.tabledplyrfarvergenericsggplot2gluegtablehmsinsightisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixminpack.lmMuMInnlmepillarpkgconfigplyrprettyunitsprogresspurrrR6RColorBrewerRcppreadrrlangrlistS7scalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrXMLyaml

Growth estimation example using the AquaticLifeHistory package
Citation | Introduction | Multi-model growth analysis with Estimate_Growth() | Input data | Example applications | Fitting specific models | Plot alterations | Returning length-at-age estimates | Model averaged results with Calculate_MMI | Sex specific growth curves | Combining two and three parameter models | Correlation matrices
Rendered fromGrowth_estimation.Rmdusingknitr::rmarkdown

Last update: 2023-11-13
Started: 2019-11-24

Maturity estimation for aquatic species through the AquaticLifeHistory package
Citation | Introduction | Input data | Using Estimate_Age_Maturity | Binomial model | Quasibinomial (binned) model | Using Estimate_Len_Maturity | Retrieving logistic model estimates
Rendered fromMaturity_analyses.Rmdusingknitr::rmarkdown

Last update: 2023-11-13
Started: 2019-11-24