Package: AquaticLifeHistory 1.0.5
AquaticLifeHistory: Life History Analysis Tools
Estimate aquatic species life history using robust techniques. This package supports users undertaking two types of analysis: 1) Growth from length-at-age data, and 2) maturity analyses for length and/or age data. Maturity analyses are performed using generalised linear model approaches incorporating either a binomial or quasibinomial distribution. Growth modelling is performed using the multimodel approach presented by Smart et al. (2016) "Multimodel approaches in shark and ray growth studies: strengths, weaknesses and the future" <doi:10.1111/faf.12154>.
Authors:
AquaticLifeHistory_1.0.5.tar.gz
AquaticLifeHistory_1.0.5.zip(r-4.5)AquaticLifeHistory_1.0.5.zip(r-4.4)AquaticLifeHistory_1.0.5.zip(r-4.3)
AquaticLifeHistory_1.0.5.tgz(r-4.5-any)AquaticLifeHistory_1.0.5.tgz(r-4.4-any)AquaticLifeHistory_1.0.5.tgz(r-4.3-any)
AquaticLifeHistory_1.0.5.tar.gz(r-4.5-noble)AquaticLifeHistory_1.0.5.tar.gz(r-4.4-noble)
AquaticLifeHistory_1.0.5.tgz(r-4.4-emscripten)AquaticLifeHistory_1.0.5.tgz(r-4.3-emscripten)
AquaticLifeHistory.pdf |AquaticLifeHistory.html✨
AquaticLifeHistory/json (API)
NEWS
| # Install 'AquaticLifeHistory' in R: |
| install.packages('AquaticLifeHistory', repos = c('https://jonathansmart.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jonathansmart/aquaticlifehistory/issues
Pkgdown site:https://jonathansmart.github.io
- growth_data - Length-at-age data for blacktip sharks
- maturity_data - Age and length-at-maturity data for silky sharks
Last updated 1 years agofrom:b32da3931e. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 04 2025 |
| R-4.5-win | OK | Mar 04 2025 |
| R-4.5-mac | OK | Mar 04 2025 |
| R-4.5-linux | OK | Mar 04 2025 |
| R-4.4-win | OK | Mar 04 2025 |
| R-4.4-mac | OK | Mar 04 2025 |
| R-4.4-linux | OK | Mar 04 2025 |
| R-4.3-win | OK | Mar 04 2025 |
| R-4.3-mac | OK | Mar 04 2025 |
Exports:Calculate_MMIEstimate_Age_MaturityEstimate_GrowthEstimate_Len_Maturity
Dependencies:backportsbitbit64broomclicliprcolorspacecpp11crayondata.tabledplyrfansifarvergenericsggplot2gluegtablehmsinsightisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmMuMInmunsellnlmepillarpkgconfigplyrprettyunitsprogresspurrrR6RColorBrewerRcppreadrrlangrlistscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrXMLyaml
Growth estimation example using the AquaticLifeHistory package
Rendered fromGrowth_estimation.Rmdusingknitr::rmarkdownon Mar 04 2025.Last update: 2023-11-13
Started: 2019-11-24
Maturity estimation for aquatic species through the AquaticLifeHistory package
Rendered fromMaturity_analyses.Rmdusingknitr::rmarkdownon Mar 04 2025.Last update: 2023-11-13
Started: 2019-11-24
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Introduction to AquaticLifeHistory | AquaticLifeHistory |
| boot_data | boot_data |
| Calculate model averaged length-at-age estimates and parameters | Calculate_MMI |
| Estimate age-at-maturity | Estimate_Age_Maturity |
| Estimate length-at-age parameters and growth curves for Elasmobranchs | Estimate_Growth |
| Estimate length-at-maturity | Estimate_Len_Maturity |
| Length-at-age data for blacktip sharks | growth_data |
| Age and length-at-maturity data for silky sharks | maturity_data |
