Package: SharkDemography 1.1.0
Jonathan Smart
SharkDemography: Shark Demographic Analyses Using Leslie Matrix Models
Run Leslie Matrix models using Monte Carlo simulations for any specified shark species. This package was developed during the publication of Smart, JJ, White, WT, Baje, L, et al. (2020) "Can multi-species shark longline fisheries be managed sustainably using size limits? Theoretically, yes. Realistically, no".J Appl Ecol. 2020; 57; 1847–1860. <doi:10.1111/1365-2664.13659>.
Authors:
SharkDemography_1.1.0.tar.gz
SharkDemography_1.1.0.zip(r-4.5)SharkDemography_1.1.0.zip(r-4.4)SharkDemography_1.1.0.zip(r-4.3)
SharkDemography_1.1.0.tgz(r-4.4-any)SharkDemography_1.1.0.tgz(r-4.3-any)
SharkDemography_1.1.0.tar.gz(r-4.5-noble)SharkDemography_1.1.0.tar.gz(r-4.4-noble)
SharkDemography_1.1.0.tgz(r-4.4-emscripten)SharkDemography_1.1.0.tgz(r-4.3-emscripten)
SharkDemography.pdf |SharkDemography.html✨
SharkDemography/json (API)
NEWS
| # Install 'SharkDemography' in R: |
| install.packages('SharkDemography', repos = c('https://jonathansmart.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jonathansmart/sharkdemography/issues
- Silky_data - Example life history data for Silky Sharks
Last updated 1 years agofrom:4c3f97f7df. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 16 2024 |
| R-4.5-win | OK | Nov 16 2024 |
| R-4.5-linux | OK | Nov 16 2024 |
| R-4.4-win | OK | Nov 16 2024 |
| R-4.4-mac | OK | Nov 16 2024 |
| R-4.3-win | OK | Nov 16 2024 |
| R-4.3-mac | OK | Nov 16 2024 |
Exports:%>%Calculate_demographycreate_data_inputEstimate_eigenvectorsEstimate_mortality_distsSimulate_AAFCSimulate_AALCSimulate_demographySimulate_F_criticalSimulate_harvest_slots
Dependencies:bitbit64clicliprcodetoolscpp11crayondeldirdigestdoFuturedoParalleldplyrfansiforeachfuturefuture.applygenericsglobalsgluehmsinterpiteratorslifecyclelistenvmagrittrMASSparallellypillarpkgconfigpopbioprettyunitsprogresspurrrR6RcppRcppEigenreadrrlangstringistringrtibbletidyrtidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The base function for calculating demographic traits using a Leslie matrix method | Calculate_demography |
| Create empty template for demography life history data | create_data_input |
| Estimate the left and right eignvectors (Reproductive value: v and Stable age distribution: w) | Estimate_eigenvectors |
| Estimate the range of mortality estimates produced by the different estimators | Estimate_mortality_dists |
| SharkDemography. | |
| Example life history data for Silky Sharks | Silky_data |
| Monte Carlo simulations of Leslie matrix models under varying levels of F and AAFC | Simulate_AAFC |
| Monte Carlo simulations of Leslie matrix models under varying levels of F and AALC | Simulate_AALC |
| Monte Carlo simulations of Leslie matrix models | Simulate_demography |
| Estimate F critical through simulations | Simulate_F_critical |
| Simulate_harvest_slots | Simulate_harvest_slots |