{
  "_id": "6a1f39acb401979e73428f56",
  "Type": "Package",
  "Package": "BayesGrowth",
  "Title": "Estimate Fish Growth Using MCMC Analysis",
  "Date": "2023-11-13",
  "Version": "1.0.0.9000",
  "Authors@R": "person(\"Jonathan\", \"Smart\", \nemail = \"jonsmartphd@gmail.com\",\nrole = c(\"aut\", \"cre\", \"ctb\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-2070-3208\"))",
  "Maintainer": "Jonathan Smart <jonsmartphd@gmail.com>",
  "Description": "Estimate fish length-at-age models using MCMC analysis\nwith 'rstan' models. This package allows a multimodel approach\nto growth fitting to be applied to length-at-age data and is\nsupported by further analyses to determine model selection and\nresult presentation. The core methods of this package are\npresented in Smart and Grammer (2021) \"Modernising fish and\nshark growth curves with Bayesian length-at-age models\". PLOS\nONE 16(2): e0246734 <doi:10.1371/journal.pone.0246734>.",
  "License": "GPL-3",
  "URL": "https://github.com/jonathansmart/BayesGrowth",
  "BugReports": "https://github.com/jonathansmart/BayesGrowth/issues",
  "SystemRequirements": "GNU make",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "Biarch": "true",
  "Config/pak/sysreqs": "make libicu-dev libxml2-dev libx11-dev",
  "Repository": "https://jonathansmart.r-universe.dev",
  "Date/Publication": "2023-11-23 23:14:37 UTC",
  "RemoteUrl": "https://github.com/jonathansmart/bayesgrowth",
  "RemoteRef": "HEAD",
  "RemoteSha": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-09 05:40:35 UTC",
    "User": "root"
  },
  "Author": "Jonathan Smart [aut, cre, ctb, cph] (ORCID:\n<https://orcid.org/0000-0003-2070-3208>)",
  "MD5sum": "ecd3ff06e41e06a90a62ab118b800877",
  "_user": "jonathansmart",
  "_type": "src",
  "_file": "BayesGrowth_1.0.0.9000.tar.gz",
  "_fileid": "5b9797070cb283936f58236e7a84dc89ecdbec5623f8b7238b88582173047efe",
  "_filesize": 1645107,
  "_sha256": "5b9797070cb283936f58236e7a84dc89ecdbec5623f8b7238b88582173047efe",
  "_created": "2026-05-09T05:40:35.000Z",
  "_published": "2026-06-02T20:14:36.113Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79162890607,
      "time": 370,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6893330472"
    },
    {
      "job": 79162890511,
      "time": 404,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6893334456"
    },
    {
      "job": 79162890865,
      "time": 382,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6893331770"
    },
    {
      "job": 79162890737,
      "time": 396,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6893333142"
    },
    {
      "job": 79162890683,
      "time": 367,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6893327725"
    },
    {
      "job": 79162890744,
      "time": 514,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6893344021"
    },
    {
      "job": 79162890623,
      "time": 273,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6893317926"
    },
    {
      "job": 79162890442,
      "time": 787,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6893369836"
    },
    {
      "job": 79162889913,
      "time": 500,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6893293157"
    },
    {
      "job": 79162889782,
      "time": 160,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 79162890368,
      "time": 480,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6893341542"
    },
    {
      "job": 79162891014,
      "time": 492,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6893343131"
    },
    {
      "job": 79162890387,
      "time": 510,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6893345164"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jonathansmart/bayesgrowth",
  "_commit": {
    "id": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
    "author": "Jonathan Smart <Jonathan.Smart@daf.qld.gov.au>",
    "committer": "Jonathan Smart <Jonathan.Smart@daf.qld.gov.au>",
    "message": "Readme updated\n",
    "time": 1700781277
  },
  "_maintainer": {
    "name": "Jonathan Smart",
    "email": "jonsmartphd@gmail.com",
    "login": "jonathansmart",
    "uuid": 20293486,
    "orcid": "0000-0003-2070-3208"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "BH",
      "version": ">= 1.66.0",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.0",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "version": ">= 0.3.3.3.0",
      "role": "LinkingTo"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "LinkingTo"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "LinkingTo"
    },
    {
      "package": "StanHeaders",
      "version": ">= 2.18.0",
      "role": "LinkingTo"
    },
    {
      "package": "AquaticLifeHistory",
      "role": "Imports"
    },
    {
      "package": "bayesplot",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "loo",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.0",
      "role": "Imports"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "Imports"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "Imports"
    },
    {
      "package": "rstantools",
      "version": ">= 2.3.1.1",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidybayes",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "jonathansmart",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 13,
  "_userbio": {
    "uuid": 20293486,
    "type": "user",
    "name": "Jonathan Smart"
  },
  "_downloads": {
    "count": 303,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BayesGrowth"
  },
  "_devurl": "https://github.com/jonathansmart/bayesgrowth",
  "_searchresults": 10,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BayesGrowth.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jonathansmart/bayesgrowth",
  "_realowner": "jonathansmart",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-11-21"
    }
  ],
  "_exports": [
    "Calc_Gompertz_LAA",
    "Calc_Logistic_LAA",
    "Calc_VBGF_LAA",
    "Calculate_MCMC_growth_curve",
    "Compare_Growth_Models",
    "Estimate_MCMC_Growth",
    "Get_MCMC_parameters"
  ],
  "_datasets": [
    {
      "name": "example_data",
      "title": "Example length-at-age data",
      "object": "example_data",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Length",
        "Age"
      ],
      "rows": 789,
      "table": true,
      "tojson": true
    },
    {
      "name": "Looic_example_results",
      "title": "Example MCMC model comparison outputs outputs",
      "object": "Looic_example_results",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Model",
        "elpd_diff",
        "se_diff",
        "elpd_loo",
        "se_elpd_loo",
        "p_loo",
        "se_p_loo",
        "looic",
        "se_looic",
        "looic_Weight"
      ],
      "rows": 3,
      "table": true,
      "tojson": true
    },
    {
      "name": "MCMC_example_results",
      "title": "Example MCMC model outputs",
      "object": "MCMC_example_results",
      "class": [
        "stanfit"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "BayesGrowth",
      "title": "BayesGrowth",
      "topics": [
        "BayesGrowth"
      ]
    },
    {
      "page": "Calc_Gompertz_LAA",
      "title": "Calc_Gompertz_LAA",
      "topics": [
        "Calc_Gompertz_LAA"
      ]
    },
    {
      "page": "Calc_Logistic_LAA",
      "title": "Calc_Logistic_LAA",
      "topics": [
        "Calc_Logistic_LAA"
      ]
    },
    {
      "page": "Calc_VBGF_LAA",
      "title": "Calc_VBGF_LAA",
      "topics": [
        "Calc_VBGF_LAA"
      ]
    },
    {
      "page": "Calculate_MCMC_growth_curve",
      "title": "Calculate_MCMC_growth_curve",
      "topics": [
        "Calculate_MCMC_growth_curve"
      ]
    },
    {
      "page": "Compare_Growth_Models",
      "title": "Compare_Growth_Models",
      "topics": [
        "Compare_Growth_Models"
      ]
    },
    {
      "page": "Estimate_MCMC_Growth",
      "title": "Estimate_MCMC_Growth",
      "topics": [
        "Estimate_MCMC_Growth"
      ]
    },
    {
      "page": "example_data",
      "title": "Example length-at-age data",
      "topics": [
        "example_data"
      ]
    },
    {
      "page": "Get_MCMC_parameters",
      "title": "Get_MCMC_parameters",
      "topics": [
        "Get_MCMC_parameters"
      ]
    },
    {
      "page": "Looic_example_results",
      "title": "Example MCMC model comparison outputs outputs",
      "topics": [
        "Looic_example_results"
      ]
    },
    {
      "page": "MCMC_example_results",
      "title": "Example MCMC model outputs",
      "topics": [
        "MCMC_example_results"
      ]
    }
  ],
  "_readme": "https://github.com/jonathansmart/bayesgrowth/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "AquaticLifeHistory",
    "arrayhelpers",
    "backports",
    "bayesplot",
    "BH",
    "bit",
    "bit64",
    "broom",
    "callr",
    "checkmate",
    "cli",
    "clipr",
    "coda",
    "cpp11",
    "crayon",
    "data.table",
    "desc",
    "distributional",
    "dplyr",
    "farver",
    "generics",
    "ggdist",
    "ggplot2",
    "ggridges",
    "glue",
    "gridExtra",
    "gtable",
    "hms",
    "inline",
    "insight",
    "isoband",
    "jsonlite",
    "labeling",
    "lattice",
    "lifecycle",
    "loo",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "minpack.lm",
    "MuMIn",
    "nlme",
    "numDeriv",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "plyr",
    "posterior",
    "prettyunits",
    "processx",
    "progress",
    "ps",
    "purrr",
    "quadprog",
    "QuickJSR",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RcppParallel",
    "readr",
    "reshape2",
    "rlang",
    "rlist",
    "rstan",
    "rstantools",
    "S7",
    "scales",
    "StanHeaders",
    "stringi",
    "stringr",
    "svUnit",
    "tensorA",
    "tibble",
    "tidybayes",
    "tidyr",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "XML",
    "yaml"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "MCMC-example.Rmd",
      "filename": "MCMC-example.html",
      "title": "Estimate growth using MCMC",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Usage",
        "Outputs and compatibility with rstan and bayesplot packages",
        "Summaries",
        "Chain convergence",
        "Autocorrelation",
        "Other useful BayesGrowth functions",
        "Model comparison and selection"
      ],
      "created": "2020-11-10 01:03:12",
      "modified": "2023-11-17 02:11:08",
      "commits": 5
    }
  ],
  "_score": 4.812913356642856,
  "_indexed": true,
  "_nocasepkg": "bayesgrowth",
  "_universes": [
    "jonathansmart"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:45:07.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "558c9133f448b5e57e68847e8c5efa4c294cbd78580388a4fa2b14f3ec5dbcc4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:45:26.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "0b933b3851d294be88686286768414326061096744d069603374c6821603c201",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:45:16.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "83bcb2172730da8b1763b84e016c24c8906d7d705b9f7e60a2707ff36f03d283",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:45:23.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "ad793b1beed6019a7545afb44f5d3316413c0cb891e43d94025aa166f47eab18",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:45:25.000Z",
      "arch": "aarch64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "44b6c7af83df0a9c986025fdd4b19ddef9e8eaf2234e7daff610507079b3d4cb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:46:07.000Z",
      "arch": "x86_64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "cfae7f1f3b630dd837dd1f42685223e3b851f3ad1f88b2e2a86a0e4890465977",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:44:35.000Z",
      "arch": "aarch64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "1d984cbcc52de505bc39f54da2da8f1ab3159189f0b45ad36a8737478a0b9dba",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:47:15.000Z",
      "arch": "x86_64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "db3655728b0dbbdb2759be4712de766568facbf63771332364d456addfd0e955",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:44:41.000Z",
      "arch": "x86_64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "ef7cb566840e03b4d4b422ec1627cf10378cc036ee0c0f184332191d24683324",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:44:28.000Z",
      "arch": "x86_64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "b776f26ae7efaff455d354fc428792c54f507491d15cb5ad2314a6579e8de5a1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0.9000",
      "date": "2026-05-09T05:44:28.000Z",
      "arch": "x86_64",
      "commit": "b874ef7bb31be22b08ad7fe9892c019caa9a8e47",
      "fileid": "3fc01cb2bf0103ae7d251c206b110f48633e4f3115e08f6b40690999699673f8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonathansmart/actions/runs/25593031270"
    }
  ]
}