Installation | Usage | Outputs and compatibility with rstan and bayesplot packages | Summaries | Chain convergence | Autocorrelation | Other useful BayesGrowth functions | Model comparison and selection
Package: BayesGrowth 1.0.0.9000
BayesGrowth: Estimate Fish Growth Using MCMC Analysis
Estimate fish length-at-age models using MCMC analysis with 'rstan' models. This package allows a multimodel approach to growth fitting to be applied to length-at-age data and is supported by further analyses to determine model selection and result presentation. The core methods of this package are presented in Smart and Grammer (2021) "Modernising fish and shark growth curves with Bayesian length-at-age models". PLOS ONE 16(2): e0246734 <doi:10.1371/journal.pone.0246734>.
Authors:
BayesGrowth_1.0.0.9000.tar.gz
BayesGrowth_1.0.0.9000.zip(r-4.7)BayesGrowth_1.0.0.9000.zip(r-4.6)BayesGrowth_1.0.0.9000.zip(r-4.5)
BayesGrowth_1.0.0.9000.tgz(r-4.6-x86_64)BayesGrowth_1.0.0.9000.tgz(r-4.6-arm64)BayesGrowth_1.0.0.9000.tgz(r-4.5-x86_64)BayesGrowth_1.0.0.9000.tgz(r-4.5-arm64)
BayesGrowth_1.0.0.9000.tar.gz(r-4.7-arm64)BayesGrowth_1.0.0.9000.tar.gz(r-4.7-x86_64)BayesGrowth_1.0.0.9000.tar.gz(r-4.6-arm64)BayesGrowth_1.0.0.9000.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BayesGrowth/json (API)
| # Install 'BayesGrowth' in R: |
| install.packages('BayesGrowth', repos = c('https://jonathansmart.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jonathansmart/bayesgrowth/issues
Datasets:
- example_data - Example length-at-age data
- Looic_example_results - Example MCMC model comparison outputs outputs
- MCMC_example_results - Example MCMC model outputs
Last updated from:9932842e6c. Checks:10 OK, 2 WARNING, 1 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 381 | ||
| linux-devel-x86_64 | OK | 444 | ||
| source / vignettes | OK | 495 | ||
| linux-release-arm64 | OK | 394 | ||
| linux-release-x86_64 | OK | 395 | ||
| macos-release-arm64 | OK | 413 | ||
| macos-release-x86_64 | OK | 667 | ||
| macos-oldrel-arm64 | WARNING | 319 | ||
| macos-oldrel-x86_64 | WARNING | 816 | ||
| windows-devel | OK | 445 | ||
| windows-release | OK | 470 | ||
| windows-oldrel | OK | 427 | ||
| wasm-release | FAIL | 175 |
Exports:Calc_Gompertz_LAACalc_Logistic_LAACalc_VBGF_LAACalculate_MCMC_growth_curveCompare_Growth_ModelsEstimate_MCMC_GrowthGet_MCMC_parameters
Dependencies:abindAquaticLifeHistoryarrayhelpersbackportsbayesplotBHbitbit64broomcallrcheckmateclicliprcodacpp11crayondata.tabledescdistributionaldplyrfarvergenericsggdistggplot2ggridgesgluegridExtragtablehmsinlineinsightisobandjsonlitelabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsminpack.lmMuMInnlmenumDerivotelpillarpkgbuildpkgconfigplyrposteriorprettyunitsprocessxprogresspspurrrquadprogQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelreadrreshape2rlangrlistrstanrstantoolsS7scalesStanHeadersstringistringrsvUnittensorAtibbletidybayestidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrXMLyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BayesGrowth | BayesGrowth |
| Calc_Gompertz_LAA | Calc_Gompertz_LAA |
| Calc_Logistic_LAA | Calc_Logistic_LAA |
| Calc_VBGF_LAA | Calc_VBGF_LAA |
| Calculate_MCMC_growth_curve | Calculate_MCMC_growth_curve |
| Compare_Growth_Models | Compare_Growth_Models |
| Estimate_MCMC_Growth | Estimate_MCMC_Growth |
| Example length-at-age data | example_data |
| Get_MCMC_parameters | Get_MCMC_parameters |
| Example MCMC model comparison outputs outputs | Looic_example_results |
| Example MCMC model outputs | MCMC_example_results |
